Genocide sites (Rwanda) - incomplete in 2019. Unesco recommended not to consider any sites related to recent conflicts.
Surame (Nigeria) - incomplete in 2012. As of 2013 there is documentation of the TWHS prepared for nomination:
https://bizwatchnigeria.ng/surame-on-the-way-to-become-a-world-heritage-site/Old Oyo (Nigeria) - rejected in 1988. I have found no record of further developments.
Oke Idanre (Nigeria) - incomplete in 2010. As of 2014 there is a report on a future nomination:
https://www.thecable.ng/idanre-hills-could-become-unesco-world-heritage-centreLake Chad (Chad, Niger, Nigeria) - postponed for security reasons in 2021
Manden sites (Mali) - incomplete in 2019, I could find no information
Boucle de Baoulé (Mali) - deferred in 1980, 1981, 1982. In 1982 the site was recognised as a Unesco biosphere reserve.
Nyika NP (Malawi) - rejected in 1984, withdrawn in 2006
Mulanje biosphere reserve (Malawi) - deferred in 2014. In 2000 the site was recognised as a Unesco biosphere reserve.
Masai Mara (Kenya) - referred in 1997. According to the following report it should be considered for 2023:
https://www.standardmedia.co.ke/business/news/article/2001362620/masai-mara-inches-closer-to-unesco-heritage-wall-of-fame